Finding Shortest Paths in Directed Graphs Using Python and Pandas
I can help you solve the problem.
The problem appears to be related to generating a path from a root node in a directed graph, where each edge has a certain weight. The goal is to find the shortest path or all simple paths from the root node to leaf nodes, excluding longer paths that include some intermediate nodes.
Here’s a step-by-step approach using Python and Pandas:
- Represent the Graph: First, we’ll represent our graph as a directed graph where each edge has a weight (which is ignored in this case but could be useful for future calculations). We can use NetworkX to handle the graph structure.
- Filter the Dataframe: We will filter out rows from our dataframe
dfthat have children nodes equal to themselves, because these nodes are not connected to any other node and thus cannot be part of a path. - Initialize the “path” Column: In this step, we initialize the “path” column by concatenating the parent node with its child node.
Here is a code snippet that represents our steps in Python:
import pandas as pd
import networkx as nx
# Load the data
df = pd.read_csv('data.csv')
# Filter out nodes that are also their children
df = df[~df["parent"].isin(df["child"])]
G = nx.DiGraph()
for index, row in df.iterrows():
G.add_edge(row['parent'], row['child'])
root = df.loc[~df["parent"].isin(df["child"]), "parent"].unique()[0]
new_df = pd.DataFrame(
{"parent": [root], "child": [""], "path": [str(root)]},
)
new_df["depth"] = new_df["path"].str.split(", ").map(len)
new_df['level_1'] = df.loc[df.parent == root, 'child'].astype(str).fillna('-999999')
new_df['level_2'] = df.loc[df.child.isin(new_df['level_1']), 'parent'].astype(str).fillna('-999999')
# Concatenate levels to generate path
new_df['path'] = new_df.stack()
new_df['path'] = new_df['path'].groupby(level=0, sort=False).agg(','.join)
new_df['path'] = new_df['path'].str.replace(r'\,+$', '', regex=True)
# Add depth for level_1 and level_2 nodes
new_df['depth'] += 1
print(new_df.to_markdown(index=False, tablefmt="github"))
In the above code:
- We first create an empty directed graph G.
- Then we add edges to this graph based on our dataframe’s parent-child relationship.
- Next, we find the root node by filtering out nodes that are also their children from the dataframe. The root is stored in variable
root. - After that, we initialize the “path” column with the root node.
- We calculate the depth of each path based on its split length and assign it to a new ‘depth’ column.
Note: Replace 'data.csv' with your actual file name if you have one.
Last modified on 2025-03-04